PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00100.44
Common NameAMTR_s00100p00127090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 111aa    MW: 12647.2 Da    PI: 5.3375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00100.44genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000155592755
                                             HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                              +Er+RR+ + +++  Lr+l+  a           +iL  A+eY+k+Lq
  evm_27.model.AmTr_v1.0_scaffold00100.44 55 VAERKRRKMLSERLYALRSLMDRA-----------SILGDAIEYVKELQ 92
                                             689***************999877...........9***********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-1140105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.00E-65096No hitNo description
SMARTSM003531.8E-45497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-974108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MMKPPISFPN LKSTSSSSQV KQEGERRGDS ISDCSEDDDE QKGRTGRKHQ SKNLVAERKR  60
RKMLSERLYA LRSLMDRASI LGDAIEYVKE LQMLVKALQE ELDETTEEEQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7548011e-80KF754801.1 Amborella trichopoda chromosome III mitochondrion, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840628.26e-64PREDICTED: transcription factor SCREAM2
RefseqXP_011621284.11e-59PREDICTED: LOW QUALITY PROTEIN: transcription factor ABORTED MICROSPORES
SwissprotQ9ZVX23e-21AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLW1NYI17e-75W1NYI1_AMBTC; Uncharacterized protein
STRINGEFJ133921e-27(Selaginella moellendorffii)
STRINGEFJ069251e-27(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-15bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]